Posts Tagged ‘botany’

Stress Causes Genes To Jump

When plants experience environmental stress, such as very hot temperatures, interesting things may happen inside plant cells at the genetic level.

For instance, heat stress (typically, leaf temperatures above 95o F for several hours) may increase the activity of “jumping genes” within the plant genomes.

The scientific name for such mobile genetic elements is transposon, from the fact that these pieces of DNA can “transpose” or “jump” from one place within the plant cell’s genome to another location.

Since transposons insert themselves randomly within the genome, they may land inside a functional gene. This is somewhat like throwing a genetic “monkey wrench” into the functional gene, effectively rendering it non-functional, that is, causing a gene mutation.

(Interestingly, if the transposon “jumps” back out of the effected gene, then its normal function may be restored.)

The American geneticist Dr. Barbara McClintock first discovered and described the nature of transposons. For this she was awarded a Nobel Prize in 1983. (A brief summary of her discovery of transposons can be found here.)

3288895386 836fff930fErasing “Bad” Memories?

Some have suggested that the fact that some transposons are activated by stress contributes to evolution (adaptation to stressful environments, for example) by helping to “stir the genetic pot”, so to speak (see Ref. 1 below, e.g.)

Another way of thinking about this that, if these genetic changes are passed onto the plant’s offspring, then this serves as sort of a trans-generational “memory” of environmental stress.

A recent paper (Ref. 2 below), however, provides evidence that plants may actually have mechanisms that suppress these “memories” by effectively “erasing” the new, stress-induced transposons (called retrotranspons) from the genome prior to sexual reproduction (i.e., flowering).

The “erasers” in this case turn out to be small pieces of RNA called small interfering RNAs (siRNAs). (Such siRNAs may provide epigenetic means to regulate gene expression via RNA interference.)

The gist of the paper is perhaps best expressed via the Editor’s Summary:
The transcription of repetitive elements such as retrotransposons — mobile genetic elements constituting more than 40% and 60% of the human and maize (corn) genomes, respectively — is normally repressed, to prevent their unchecked dissemination throughout the genome. Ito et al. show that heat stress in Arabidopsis plants induces transcription of the ONSEN retroelement. Accumulation of ONSEN is suppressed by small interfering RNAs (siRNAs). In the absence of siRNAs, new ONSEN insertions appear in the progeny, having transposed during differentiation. These results imply a memory of stress that is counteracted by siRNAs, providing a way of preventing transgenerational retrotransposition in plants facing environmental stress.”

Bottom Line: Plants may possess genetic mechanisms to accelerate evolution in response to changing environments, but they may also have “brakes” on such systems as well.


1. Pierre Capy, Giuliano Gasperi, Christian Biémont and Claude Bazin (2000) “Stress and transposable elements: co-evolution or useful parasites?”Heredity 85:101–106

2. Hidetaka Ito, Hervé Gaubert, Etienne Bucher, Marie Mirouze, Isabelle Vaillant and Jerzy Paszkowski (07 April 2011) “An siRNA pathway prevents transgenerational retrotransposition in plants subjected to stress.” Nature 472:115–119.

HowPlantsWork © 2008-2011 All Rights Reserved.

Read Full Post »

Venus_flytrap.jpg“Springing the Trap”

In the previous post I suggested that the Venus flytrap works something like a mousetrap. And I described how the “trap” is hydraulically set. (For a more thorough explanation of how the Venus flytrap snaps, please see PDF file here).

But how do the trigger-hairs on the surface of the flytrap’s leaves act to “spring the trap”?

Briefly, the mechanical movement of the trigger-hairs protruding from the leaf activates mechanosensitive ion channels and generates receptor potentials that induce an action potential.

This action potential travels to the midrib of the leaf where it promotes the opening of water channels called aquaporins. This facilitates the rapid water efflux from key cells that hydraulically control the leaf opening.

More simply put, the stimulation of the leaf hairs produce electrical signals that cause the rapid deflation of the water-pressurized cells that keep the leaves open. And, thus, the “trap is sprung”.

(Please see here and here for some recent information regarding the the kinetics and mechanism of the Venus flytrap.)

ligtning_plants.jpgElectrical Signals in Plants?

Do plants have a nervous system?

The short answer is: no. (At least not the complex nervous system of animals.)

But scientists have been able to detect transient electrical signals somewhat analogous to action potentials under certain situations in plants.

Such situations involve the classic examples of thigmosnasty in plants, namely, the “touch-sensitive” plant (Mimosa pudica) and the Venus flytrap.

Charles Darwin described the Venus flytrap plant as “…one of the most wonderful in the world.” on page 231 of his book Insectivorous Plants.

Sparked by a correspondence with Darwin, which included some Venus flytrap plants, the English physiologist John Scott Burdon-Sanderson was the first to discover action potentials in plants following stimulation of a leaf. (Please see reference 1 below.)

electricity_plants.jpgDo Plants Have a Neural Net?

In addition to thigmosnastic plants, all vascular plants may be utilizing electrical signals to regulate a variety of physiological functions.

Many of the biochemical and cellular components of the neuromotoric system of animals has been found in plants. And this has led to the hypothesis that a simple neural network is present in plants, especially within phloem cells, which is responsible for the communication over long distances.

“The reason why
plants have developed pathways for electrical signal transmission
is most probably the necessity to respond rapidly to
external stimuli, for example, environmental stress factors.” (from ref 2 below)

More regarding electrical communication in plants: Novel electrical signals in plants induced by wounding

The Emerging Field of Plant Neurobiology

In 2006, an article was published in the journal Trends in Plant Science that elicited quite a kerfuffle.

This review (PDF) introduced, to the plant scientific community at least, the field of “Plant Neurobiology”. Although this proposal was not without controversy (PDF), the Society for Plant Neurobiology seems to be alive and well (Plant Neurobiology Website). (And if you happen to be in Kitakyushu, Japan, in May this year, you may be able to attend the 6th International Symposium on Plant Neurobiology).

Bottom line: Though plants don’t have a nervous system like animals, plants do have the necessary electrical, biochemical, and cellular components indicative of a neural network, albeit a relatively simple one.

1. Burdon-Sanderson J. (1873) Note on the electrical phenomena
which accompany irritation of the leaf of Dionaea muscipula.
Proceedings of the Royal Society of London 21, 495–496.
2. Fromm, J & S. Lautner (2007) Electrical signals and their physiological significance in plants. Plant, Cell and Environment 30, 249-257. (PDF)

HowPlantsWork © 2008-2011 All Rights Reserved.

Read Full Post »

Secret_Life_Plants.gifDo Plants Have a Nervous System?

Back in the heady (hazy?) days of the early 1970’s, a book was making the rounds on college campuses that suggested plants possessed a sort of sentience.

This book was The Secret Life of Plants.

The professor teaching my Introductory Botany class at the time loathed this book. He actually stated in class that any student he caught in possession of this book would receive a grade of “F”. (True story!)

Although this prof’s reaction was perhaps an extreme example, this story serves to illustrate the general attitude within the scientific community against any suggestion that plants possess a nervous system .

The notion that plants could feel pain, for example, or move rapidly in response to stimuli was solely within the realm of science fiction. (see here and here, for example)

2703146160_61f006d6f5.jpgWhat About the Venus Flytrap?

There are, however, some examples of relatively rapid movements in some plants in response to external stimuli, the most famous of which is the Venus fly trap.

Another example is the rapid leaf movements in the touch-sensitive plant Mimosa pudica. (see a YouTube video here)

In this case, as well as in the Venus fly trap, it’s not so much that the plant is moving in response to mechanical stimulation, but that the touch is triggering a sort of spring-loaded mechanism. Think of an old-fashioned mouse trap – gently touch the triggering mechanism, and the trap snaps shut.

In these plants, however, it’s kind of a hydraulic spring-loading. That is, when some cells within a thickening at the base of the leaves called a pulvinus have a high turgor pressure, this causes the leaves to open. And if these cells lose turgor pressure, the leaves close.

But how does mechanical stimulation trigger the rapid loss of cell turgor pressure in these plants?

mouse-trap.jpg“Setting the Trap”

Plant cells, like animal cells, generate an electrical membrane potential across their cellular membranes.

In plants, this is mainly generated by converting the chemical energy of ATP into electrochemical energy by proton pumps. (Your cells use Na/K-ATPases.)

Some of the energy in this membrane potential is used by cells to accumulate solutes such as sugars and mineral ions such as potassium. This accumulation of solutes draws water into the cells via osmosis.

This is how the pulvinus cells in the Venus fly trap and the touch-sensitive plants likely generate their turgor pressure to open the leaves.

Now the leaves are hydraulically “spring-loaded”, and ready….

Next time: How electrical signals “spring the trap”. Also, an introduction to the emerging field of Plant Neurobiology.

HowPlantsWork © 2008-2011 All Rights Reserved.

Read Full Post »

646px Satyrium pumilum 160403Some Pollinators Attracted By The Scent Of Death

Floral odors, produced by the vast majority of flowering plants, play important roles in plant–pollinator interactions.

A recent report of an orchid that attracts pollinators with the smell of carrion (see reference 1 below) reminded me of the infamous Voodoo lily, which was the subject of one of the professors in my department when I was a grad student.

Before I get to the Voodoo lily (a.k.a. “corpse flower”), what’s the story about this orchid?

From the abstract of ref 1:
Although pollination of plants that attract flies by resembling their carrion brood and food sites has been reported in several angiosperm families, there has been very little work done on the level of specificity in carrion mimicry systems and the importance of plant cues in mediating such specialization.

The authors, who are at the University of KwaZulu-Natal, South Africa, studied the orchid Satyrium pumilum, native to the dry inland regions of the southwest cape of South Africa, and a local assemblage of carrion flies that pollinated this plant.

Briefly, from the conclusion of this paper:
“Satyrium pumilum selectively attracts flesh flies, probably because its relatively weak scent resembles that of the small carrion on which these flies predominate.

I’ve previously posted about the Voodoo lily (Sauromatum guttatum) with regard to thermogenesis in plants. But I didn’t tell much about the awful smell this flower produces.

The odor of the flowering Voodoo lily is somewhat infamous. Imagine what hamburger would smell like if a package of it sat inside a car in the summer, for about a week. It’s really that bad.

Turns out that some of the volatile chemical constituents of the odor produced by the Voodoo lily are also produced by the stinkhorn mushroom (see ref 2 below).

Botanical Term of the Day: “Sapromyiophily”

Hundreds of individual plant species from at least eight plant families “…emit odours reminiscent of rotting fish, carrion or dung. These odours mimic the substrate to which insects within the orders Coleoptera and Diptera (Wiens, 1978; Faegri & Van der Pijl, 1979) are usually attracted in order to oviposit or feed. The attraction of flies to brood-site and food mimics has given this distinct, deceptive pollination syndrome its common name: sapromyiophily. Sapromyiophilous flowers present adaptations to their special method of pollinator attraction involving situation, shape, colour, pattern, texture, scent, thermogenesis, motile appendages and changes of posture (Proctor et al., 1996). The plant families involved are diverse, yet they show both clear parallels between families and, nevertheless, a high variation within families.” (from ref 3 below, which is, by the way, a good reference source)

Bottom line: What’s in a name? That which we call a “corpse flower”, by any other name would smell as sweet…to a carrion fly. (apologies to W. Shakespeare)


1. Timotheüs van der Niet, Dennis M. Hansen and Steven D. Johnson (2011) “Carrion mimicry in a South African orchid: flowers attract a narrow subset of the fly assemblage on animal carcasses.” Annals of Botany, doi: 10.1093/aob/mcr048.
(Abstract PDF)

To see photos related to this paper, click here.

2. Anna-Karin Borg-Karlson, Finn O. Englund and C. Rikard Unelius (1994) “Dimethyl oligosulphides, major volatiles released from Sauromatum guttatum and Phallus impudicus.” Phytochemistry, vol. 35, pp. 321-323. (Abstract PDF)

3. Andreas Jürgens, Stefan Dötterl and Ulrich Meve (2006) “The chemical nature of fetid floral odours in stapeliads (Apocynaceae-Asclepiadoideae-Ceropegieae).” New Phytologist, vol. 172, pp. 452-468. (Full Text PDF)

HowPlantsWork © 2008-2011 All Rights Reserved.

Read Full Post »

Anthers pollenEscape of the Transgenes?

Last week, I was a bit startled as I listened to a podcast of NPR’s Science Friday program.

In this episode (2/18/2011), host Ira Flatow was interviewing the new president of the American Association for the Advancement of Science (AAAS) Dr. Nina Fedoroff (a distinguished plant molecular biologist, by the way).

She shocked me (and, apparently, Ira Flatow) by flatly denying that there were any cases of transgenes “leaking” into the environment from genetically-engineered (GE) crop plants.

To Ira’s credit, he challenged her on this somewhat preposterous statement. (See below why it was indeed such a surprising remark.)

Because this episode elicited a “storm” of letters and e-mails, Ira Flatow did a follow-up interview (which you can listen to here) with Fedoroff and plant ecologist Dr. Allison Snow.

Briefly, Dr. Snow provided several examples of transgenes being acquired by wild relatives of genetically engineered crop plants, particularly canola. Dr. Fedoroff seemed to dismiss these examples as merely “management” problems.

It’s Hard To Corral A Transgene In The Wild.

Contrary to Dr. Fedoroff’s statement on Science Friday, there is ample evidence that transgenes have “leaked” from GE crops to other plants.

Escape plantFor example, in a previous post regarding the herbicide Roundup® (glyphosate), I noted how a transgene conferring resistance to Roundup® had escaped from a test plot of genetically-engineered turfgrass to adjacent populations of a related native grass.

There certainly are other published examples (see ref. 1, e.g.) of gene flow from GE crops to other non-GE crops and to weedy or wild relatives. And, as genetically-engineered organisms (GEOs), such as crop plants, proliferate, there will likely be more.

It’s not hard to imagine the ecological and agricultural implications if so-called “weedy” plants acquire transgenes conferring herbicide tolerance and pest resistance, for example, from related GE crop species.

But, although gene flow from GE plants to wild relatives has been well documented, the ecological significance of these occurrences is much less well understood.

Overall, there are relatively few data available with which to evaluate the potential for increased weediness or invasiveness in a crop species with fitness-enhancing abiotic and biotic GM traits. A better understanding is needed of the factors that presently control population size and range limits of either the crop volunteers or wild recipient populations, and the degree that survival or reproduction in the field is presently affected by the relevant biotic or abiotic stress-tolerance trait.” – from Ref. 1 below.

In a sense, Dr. Fedoroff is correct in stating that this is a “management” issue. But perhaps such management of GE crops should be conducted primarily by plant ecologists, such as Dr. Snow (see ref. 2, e.g.), rather than by plant genetic engineers.

Re. DIY Biotechnologists: This is certainly one of the serious drawbacks of GEOs that all of you DIY genetic engineers must seriously consider before releasing your creations into the wild.


1. Warwick, S.I., H.J. Beckie and L.M. Hall (2009) “Gene Flow, Invasiveness, and Ecological Impact of Genetically Modified Crops”, Annals of the New York Academy of Sciences, Vol. 1168, pp. 72–99. (PDF)

2. Snow, Allison A. (2010) “Risks of Environmental Releases of Synthetic GEOs”, Invited Presentation for the Presidential Commission for the Study of Bioethical Issues, July 8, 2010 (PDF) The agenda and video of this meeting are available here.

HowPlantsWork © 2008-2011 All Rights Reserved.

Read Full Post »

3081994600 88b5b9f4f7Whither Plant Genetic Engineering?

The first generation of transgenic plants was in its infancy in the 1980’s, came of age in the 1990’s and seems to have settled into staid middle age in the past ten years.

So, what’s next?

A succinct answer is provided here thanks to the Crop Science Society of America (CSSA): “First-generation genetically modified (GM) transgenic crops with novel traits have been grown in a number of countries since the 1990’s. Most of these crops had a single gene that allowed them to tolerate herbicide application, giving them an advantage over wild species.

Second-generation transgenic crops are now being tested in confined field trials around the world. Some of these traits will allow crops to tolerate environmental stress such as drought, cold, salt, heat, or flood. Other traits being developed may lead to increased yield or lower nutrient requirements, or increase tolerance to disease and pathogens.”

New generations of transgenic plants are being produced, as, perhaps, a way to counter potential “mid-life crises” of current GM crops.

Such “crises” include the emergence of “superweeds”, the ineffectiveness of insect resistance in some GM cotton, e.g., and the “contamination” of agricultural and natural landscapes by GM crops or by “transgene pollution” via horizontal gene transfer.

(FYI – Monsanto responds to ineffectiveness of Bt cotton in India)

But how does one go about making such “second generation” GM plants?

More Is Better: “Trait-Stacking” & Multigene Transfer

3967341366 b02cc2d99dOne way to make the “next generation” of GM crop plants is to simply add two or more “commercially-desirable” traits, such as herbicide tolerance and insect resistance, to one plant.

According to the GMO Compass website: “Herbicide tolerance (HT) continues to be the most common transgenic trait in GM crops worldwide.” And “Insect resistance (mostly Bt) is the second most common genetically modified trait. Herbicide tolerance and insect resistance (Bt) often are introduced simultaneously to a crop in one transformation event. This is called trait stacking. The third most commonly grown transgenic crop was stacked insect resistant/herbicide tolerant maize. Combined herbicide and insect resistance was the fastest growing GM trait from 2004 to 2005, grown on over 6.5 million hectares in the US and Canada and comprising seven percent of the global biotech area.”

(FYI – Monsanto’s take on “gene stacking”)

Another class of second generation GM plants is more complex phenotypically than “stacked” GM plants. Such “ambitious” phenotypes may result from the insertion of multiple genes – even artificial chromosomes called minichromosomes – into GM plants.

“Instead of attempting to generate useful transgenic plants by introducing single genes, we now see an increasing number of researchers embracing multigene transfer (MGT) as an approach to generate plants with more ambitious phenotypes. MGT allows researchers to achieve goals that were once impossible – the import of entire metabolic pathways, the expression of entire protein complexes, the development of transgenic crops simultaneously engineered to produce a spectrum of added-value compounds. The potential appears limitless.” (from reference 1 below)

So, whither plant genetic engineering? – “The potential appears limitless”!


1. Shaista Naqvi, Gemma Farré, Georgina Sanahuja, Teresa Capel, Changfu Zhu and Paul Christou (2010) “When more is better: multigene engineering in plants.” Trends in Plant Science Vol. 15, pp. 48-56. (Abstract)

HowPlantsWork © 2008-2011 All Rights Reserved.

Read Full Post »

3554315659_58ffc0bbda.jpg“Apple, Peaches, Pumpkin Pie….”

After the initial reports in 1983 of successful genetic transformation of tobacco, petunia and sunflower plants using Agrobacterium to mediate gene transfer, this technique was tried on many other crop plants.

By 1989, a colleague at the time summarized a “Plant Gene Transfer” meeting he’d attended by singing the line “Apple, Peaches, Pumpkin Pie….” from the 1967 hit song by Jay & The Techniques.

It was almost easier to name the crop plants NOT reported as being genetically modified using Agrobacterium.

There were, however, a very important group of crop plants not amenable to this transformation technique. The cereals.

Corn (maize), wheat, barley, oats, etc., all resisted efforts at genetic transformation using the Agrobacterium-based technology. The reasons are complex, but suffice it to say here that it was mainly due to the fact that they are all monocots. The cereals not only don’t serve as good hosts for Agrobacterium, but also can’t be regenerated very easily via tissue culture, which is a critical step in Agrobacterium-mediated genetic transformation.

So, what were the poor cereal breeders to do?

Shotgunning DNA

In 1988, it was reported (see ref. 1 below) that maize could be genetically transformed by bombarding maize embryos (isolated from seeds) with extremely small tungsten micro-projectiles (0.6 or 2.4 microns in diameter) coated with DNA. Thus, these researchers avoided having to use Agrobacterium to deliver the foreign DNA into plant cells and, by using maize embryos, the necessity of generating plants from somatic cells.

And so the gene gun was born.

Information about the Biolistic®-PDS-1000/He Particle Delivery System, e.g., can be found here. (And you may even be able to buy a used one for $100!)

So, by 1990, there were multiple ways to genetically transform plants. And the race was on to develop commercially available (and profitable) GMOs.


The first GMO approved by the USDA for human consumption was the “Flavr Savr” tomato in 1992. And by 1996, Roundup Ready® soybeans were sold by Monsanto. As indicated in the graph above, both herbicide-tolerant (HT) and insect-resistant (Bt) genetically engineered (GE) crops have been widely adopted by U.S. farmers. (For more info click on figure.)

Though their GE crops have sold well, biotech companies want to protect their investments by limiting or preventing the ability of growers to save seeds from GE crops. One way is through litigation. Another way is through technology.

“Terminating” Seed Germinationthe-terminator.jpg

Officially called the Technology Protection System (TPS), a way was found to block the germination of seed produced by GE plants.

Briefly, this so-called “terminator” technology incorporates genes into GE plants that, when expressed, are lethal to seed embryos. (see ref. 2 below for more information)

T-GURTs Are “Traitors”

Another technological way to prevent farmers from saving and replanting seeds from GE crop plants would be to incorporate traits into the GE plants that would require a special chemical for second-generation seeds to germinate. Sort of like a special key for the lock.

Officially known as Trait-specific Genetic Use Restriction Technology or T-Gurt (a.k.a., “Traitor” technology), this method incorporates a genetic control mechanism that requires yearly applications of a proprietary chemical to activate desirable traits. (see ref. 2 below for more information)

Bottom Line: These days, the genetic transformation of plants, even cereals, has become routine. And there are even ways to insert “locks and keys” into your GE plants.


1. Klein, T.M., Fromm, M.E., Weissinger, A., Tomes, D., Schaaf, S., Sleeten, M. & Sanford, J.C. (1988) “Transfer of foreign genes into intact maize cells with high-velocity microprojectiles.” Proceedings of the National Academy of Sciences (USA) Vol. 85, pp. 4305-4309. (PDF)

2. “Terminator” Technology, Department of Soil and Crop Sciences, Colorado State University.

HowPlantsWork © 2008-2011 All Rights Reserved.

Read Full Post »

Older Posts »